Research Catalog

Title

Computer analysis of sequence data / edited by Annette M. Griffin and Hugh G. Griffin.

Publication

Totowa, N.J. : Humana Press, c1994.

Items in the Library & Off-site

Details

Additional Authors

• Griffin, Annette M.
• Griffin, Hugh G.

Description

2 v. : ill.; 23 cm.

Series Statement

Methods in molecular biology ; 24-25

Uniform Title

Methods in molecular biology (Clifton, N.J.) ; 24-25.

Subjects

• Amino acid sequence > Data processing
• Nucleotide sequence > Data processing

Bibliography (note)

• Includes bibliographical references and indexes

Contents

• pt. 1. Computer analysis of sequence data -- GCG: fragment assembly programs -- GCG: drawing linear restriction maps -- GCG: drawing circular restiction maps -- GCG: displaying restriction sites and possible translations in a DNA sequence -- GCG: assembly of sequences into new sequence constructs -- GCG: comparison of sequences -- GCG: production of multiple sequence alignment -- GCG: database searching -- GCG: pattern recognition -- GCG: translation of DNA sequence -- GCG: analysis of protein sequences -- GCG: the analysis of RNA secondary structure -- GCG: preparing sequence data for publication -- MicroGenie: introduction and restriction enzyme analysis -- MicroGenie: shotgun DNA sequencing -- MicroGenie: translation -- MicroGenie: protein analysis.
• (cont) MicroGenie: homology searches -- PC/GENE: sequence entry and assembly -- PC/GENE: restriction enzyme analysis -- PC/GENE: translation and searches for protein coding regions -- PC/GENE: sequence comparisons and homologies -- PC/GENE: database searches -- PC/GENE: searches for functional sites in nucleic acids and proteins -- Using the FASTA program to search protein and DNA sequence databases -- Converting between sequence formats -- Obtaining software via INTERNET -- Submission of nucleotide sequence data to EMBL/GenBank/DDBJ -- pt. 2. Computer analysis of sequence data -- Staden: introduction -- Staden: sequence input, editing and sequence library use.
• (cont) Staden: managing sequence projects -- Staden: statistical and structural analysis of nucleotide sequences -- Staden: searching for restriction sites -- Staden: translating and listing nucleic acid sequences -- Staden: searching for motifs in nucleic acid sequences -- Staden: using patterns to analyze nucleic acid sequences -- Staden: analyzing sequences to find genes -- Staden: statistical and structural analysis of protein sequences -- Staden: searching for motifs in protein sequences -- Staden: using patterns to analyze protein sequences -- Staden: comparing sequences -- Staden plus -- DNA strider: a Macintosh program for handling protein and nucleic acid sequences -- MacVector: an integrated sequence analysis program for the Macintosh -- MacVector: aligning sequences -- MacVector: sequence comparisons using a matrix method.
• (cont) MacVector: restriction enzyme analysis -- MacVector: protein analysis -- Profile analysis -- Prediction of RNA secondary structure by energy minimization -- Classification and function prediction of proteins using diagnostic amino acid patterns -- CLUSTAL V: multiple alignment of DNA and protein sequences -- Progressive multiple alignment of protein sequences and the construction of phylogenetic trees -- AMPS package for multiple protein sequence alignment -- TreeAlign -- Using the FASTA program to search protein and DNA sequence databases -- Converting between sequence formats -- Obtaining software via INTERNET -- Submission of nucleotide sequence data to EMBL/GenBank/DDBJ.

Call Number

JSE 95-1069

ISBN

• 0896032469 (pt. 1)
• 0896032760 (pt. 2)

LCCN

93036758 //r94

OCLC

29185292

Title

Computer analysis of sequence data / edited by Annette M. Griffin and Hugh G. Griffin.

Imprint

Totowa, N.J. : Humana Press, c1994.

Series

Methods in molecular biology ; 24-25

Methods in molecular biology (Clifton, N.J.) ; 24-25.

Bibliography

Includes bibliographical references and indexes

Added Author

Griffin, Annette M.

Griffin, Hugh G.

Research Call Number

JSE 95-1069