Research Catalog

Title

The analysis of gene expression data : methods and software / Giovanni Parmigiani ... [et al.] editors.

Publication

New York : Springer-Verlag, c2003.

Items in the Library & Off-site

Details

Additional Authors

Parmigiani, G. (Giovanni)

Description

xix, 455 p., 38 p. of plates : ill. (some col.); 24 cm.

Series Statement

Statistics for biology and health

Uniform Title

Statistics for biology and health.

Subject

• DNA microarrays
• Electronic Data Processing
• Gene Expression
• Gene expression > Data processing
• Gene expression > Methodology
• Oligonucleotide Array Sequence Analysis

Bibliography (note)

• Includes bibliographical references and index.

Contents

• 1. The Analysis of Gene Expression Data: An Overview of Methods and Software / Giovanni Parmigiani, Elizabeth S. Garrett, Rafael A. Irizarry and Scott L. Zeger -- 2. Visualization and Annotation of Genomic Experiments / Robert Gentleman and Vincent Carey -- 3. Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data / Sandrine Duroit and Jean Yee Hwa Yang -- 4. An R Package for Analyses of Affymetrix Oligonucleotide Arrays / Rafael A. Irizarry, Laurent Gautier and Leslie M. Cope -- 5. DNA-Chip Analyzer (dChip) / Cheng Li and Wing Hung Wong -- 6. Expression Profiler / Jaak Vilo, Misha Kapushesky, Patrick Kemmeren, Ugis Sarkans and Alvis Brazma -- 7. An S-PLUS Library for the Analysis and Visualization of Differential Expression / Jae K. Lee and Michael O'Connell --
• 8. DRAGON and DRAGON View: Methods for the Annotation, Analysis, and Visualization of Large-Scale Gene Expression Data / Christopher M. L. S. Bouton, George Henry, Carlo Colantuoni and Jonathan Pevsner -- 9. SNOMAD: Biologist-Friendly Web Tools for the Standardization and NOrmalization of Microarray Data / Carlo Colantuoni, George Henry, Christopher M. L. S. Bouton, Scott L. Zeger and Jonathan Pevsner -- 10. Microarray Analysis Using the MicroArray Explorer / Peter F. Lemkin, Gregory C. Thornwall and Jai Evans -- 11. Parametric Empirical Bayes Methods for Microarrays / Michael A. Newton and Christina Kendziorski -- 12. SAM Thresholding and False Discovery Rates for Detecting Differential Gene Expression in DNA Microarrays / John D. Storey and Robert Tibshirani -- 13. Adaptive Gene Picking with Microarray Data: Detecting Important Low Abundance Signals / Yi Lin, Samuel T. Nadler, Hong Lan, Alan D. Attie and Brian S. Yandell --
• 14. MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments / Hao Wu, M. Kathleen Kerr, Xiangqin Cui and Gary A. Churchill -- 15. GeneClust / Kim-Anh Do, Bradley Broom and Sijin Wen -- 16. POE: Statistical Methods for Qualitative Analysis of Gene Expression / Elizabeth S. Garrett and Giovanni Parmigiani -- 17. Bayesian Decomposition / Michael F. Ochs -- 18. Bayesian Clustering of Gene Expression Dynamics / Paola Sebastiani, Marco Ramoni and Isaac S. Kohane -- 19. Relevance Networks: A First Step Toward Finding Genetic Regulatory Networks Within Microarray Data / Alul J. Butte and Isaac S. Kohane.

ISBN

0387955771 (alk. paper)

LCCN

2002030572

Owning Institutions

Columbia University Libraries