Research Catalog

Title

System modeling in cell biology : from concepts to nuts and bolts / edited by Zoltan Szallasi, Jörg Stelling, Vipul Periwal.

Publication

Cambridge, Mass. : MIT Press, [2006], ©2006.

Items in the Library & Off-site

Holdings

Details

Additional Authors

• Szallasi, Zoltan.
• Stelling, Jörg.
• Periwal, Vipul.

Description

xiv, 448 pages : illustrations; 24 cm

Alternative Title

System modeling in cellular biology

Subjects

• Biological systems
• Cytology > Data processing
• Cytology > Mathematical models
• Cytology > Computer simulation

Note

• "A Bradford book."

Bibliography (note)

• Includes bibliographical references (p. [385]-433) and index.

Contents

1. The role of modeling in systems biology / Douglas B. Kell and Joshua D. Knowles -- 2. Complexity and robustness of cellular systems / Jorg Stelling, Uwe Sauer, Francis J. Doyle III and John Doyle -- 3. On modules and modularity / Zoltan Szallasi, Vipul Periwal and Jorg Stelling -- 4. Bayesian inference of biological systems : the logic of biology / Vipul Periwal -- 5. Stoichiometric and constraint-based modeling / Steffen Klamt and Jorg Stelling -- 6. Modeling molecular interaction networks with nonlinear ordinary differential equations / Emery D. Conrad and John J. Tyson -- 7. Qualitative approaches to the analysis of genetic regulatory networks / Hidde de Jong and Delphine Ropers -- 8. Stochastic modeling of intracellular kinetics / Johan Paulsson and Johan Elf -- 9. Kinetics in spatially extended systems / Karsten Kruse and Johan Elf -- 10. Biological data acquisition for system level modeling - an exercise in the art of compromise / Zoltan Szallasi -- 11. Methods to identify cellular architecture and dynamics from experimental data / Rudiyanto Gunawan, Kapil G. Gadkar and Francis J. Doyle III -- 12. Using control theory to study biology / Brian P. Ingalls, Tau-Mu Yi and Pablo A. Iglesias -- 13. Synthetic gene regulatory systems / Mads Kaern and Ron Weiss -- 14. Multilevel modeling in systems biology : from cells to whole organs / Denis Noble -- 15. Computational constraints on modeling in systems biology / Vipul Periwal -- 16. Numerical simulation for biochemical kinetics / Daniel T. Gillespie and Linda R. Petzold -- 17. Software infrastructure for effective communication and reuse of computational models / Andrew Finney, Michael Hucka, Benjamin J. Bornstein, Sarah M. Keating, Bruce E. Shapiro, Joanne Matthews, Ben L. Kovitz, Maria J. Schilstra, Akira Funahashi, John Doyle and Hiroaki Kitano.

ISBN

0262195488 (alk. paper)

LCCN

• 2005054539
• 9780262195485

OCLC

• ocm62134809
• SCSB-5243888

Owning Institutions

Columbia University Libraries