Research Catalog

Title

Computational systems biology / edited by Jason McDermott [and others].

Publication

Totowa, N.J. : Humana ; London : Springer [distributor], 2009.

Items in the Library & Off-site

Holdings

Details

Additional Authors

McDermott, Jason.

Description

xviii, 587 pages : illustrations (some color); 27 cm.

Series Statement

• Methods in molecular biology ; 541
• Springer protocols

Uniform Title

• Methods in molecular biology (Clifton, N.J.) ; v. 541.
• Springer protocols (Series)

Subjects

• Systems Biology
• Computational biology
• Computational Biology
• Systems biology

Bibliography (note)

• Includes bibliographical references and index.

Contents

Pt. I. Network Components -- 1. Identification of cis-Regulatory Elements in Gene Co-expression Networks Using A-GLAM / Leonardo Marino-Ramirez, Kannan Tharakaraman, Olivier Bodenreider, John Spouge and David Landsman -- 2. Structure-Based Ab Initio Prediction of Transcription Factor-Binding Sites / L. Angela Liu and Joel S. Bader -- 3. Inferring Protein-Protein Interactions from Multiple Protein Domain Combinations / Simon P. Kanaan, Chengbang Huang, Stefan Wuchty, Danny Z. Chen and Jesus A. Izaguirre -- 4. Prediction of Protein-Protein Interactions: A Study of the Co-evolution Model / Itai Sharon, Jason V. Davis and Golan Tona -- 5. Computational Reconstruction of Protein-Protein Interaction Networks: Algorithms and Issues / Eric Franzosa, Bolan Linghu and Tu Xia -- 6. Prediction and Integration of Regulatory and Protein-Protein Interactions / Duangdao Wichadakul, Jason McDermott and Ram SamuArala -- 7. Detecting Hierarchical Modularity in Biological Networks / Erzsebet Ravasz -- Pt. II. Network Inference -- 8. Methods to Reconstruct and Compare Transcriptional Regulatory Networks / M. Madan Babu, Benjamin Lang and L. Aravind -- 9. Learning Global Models of Transcriptional Regulatory Networks from Data / Aviv Madar and Richard Bonneau -- 10. Inferring Molecular Interactions Pathways from eQTLData / Imran Rashid, Jason McDermott and Ram Samudrala -- 11. Methods for the Inference of Biological Pathways and Networks / Roger E. Bumgarner and Ka Tee Teung -- Pt. III. Network Dynamics -- 12. Exploring Pathways from Gene Co-expression to Network Dynamics / Huai Li, Yu Sun and Ming Zhan -- 13. Network Dynamics / Herbert M. Sauro -- 14. Kinetic Modeling of Biological Systems / Haluk Resat, Linda Petzold and Michel F. Pettigrew -- 15. Guidance for Data Collection and Computational Modelling of Regulatory Networks / Adam Christopher Palmer and Keith Edward Shearwin -- Pt. IV. Function and Evolutionary Systems Biology -- 16. A Maximum Likelihood Method for Reconstruction of the Evolution of Eukaryotic Gene Structure / Liran Carmel, Igor B. Rogozin, Yuri I. Wolf and Eugene V. Koonin -- 17. Enzyme Function Prediction with Interpretable Models / Umar Syed and Golan Yona -- 18. Using Evolutionary Information to Find Specificity-Determining and Co-evolving Residues / Grigory Kolesov and Leonid A. Mirny -- 19. Connecting Protein Interaction Data Mutations Disease Using Bioinformatics / Jake Y. Chen, Eunseqg Youn and Sean D. Mooney -- 20. Effects of Functional Bias on Supervised Learning of a Gene Network Model / Insuk Lee and Edward M. Marcotte -- Pt. V. Computational Infrastructure for Systems Biology -- 21. Comparing Algorithms for Clustering of Expression Data: How to Assess Gene Clusters / Golan Yona, William Dirks and Shafquat Rahman -- 22. The Bioverse API and Web Application / Michal Guerquin, Jason McDermott, Zach Frazier and Ram Samudrala -- 23. Computational Representation of Biological Systems / Zach Frazier, Jason McDermott, Michal Guerquin and Ram Samudrala -- 24. Biological Network Inference and Analysis Using SEBINI and CABIN / Ronald Taylor and Mudita Singhal.

ISBN

• 9781588299055 (hbk.)
• 1588299058 (hbk.)

LCCN

2009920380

OCLC

• ocn276225729
• 276225729
• SCSB-5465404

Owning Institutions

Columbia University Libraries