Research Catalog

Title

Data mining for systems biology : methods and protocols / edited by Hiroshi Mamitsuka.

Publication

• New York : Humana Press : Springer, [2018].
• c2018

Items in the Library & Off-site

Details

Additional Authors

Mamitsuka, Hiroshi,

Description

xi, 243 pages : illustrations (some color); 25cm.

Series Statement

Methods in molecular biology ; 1807

Uniform Title

Methods in molecular biology (Clifton, N.J.) ; v. 1807.

Subject

• Data mining > Laboratory manuals
• Systems biology > Laboratory manuals

Bibliography (note)

• Includes bibliographical references and index.

Additional Formats (note)

• Also available in an electronic version.

Contents

Identifying bacterial strains from sequencing data / Tommi Mäklin, Jukka Corander, and Antti Honkela -- MetaVW : large-scale machine learning for metagenomics sequence classification / Kévin Vervier, Pierre Mahé, and Jean-Philippe Vert -- Online interactive microbial classification and geospatial distributional analysis using BioAtlas / Jesper Lund, Qihua Tan, and Jan Baumbach -- Generative models for quantification of DNA modifications / Tarmo Äijö, Richard Bonneau, and Harri Lähdesmäki -- DiMmer : discovery of differentially methylated regions in epigenome-wide association study (EWAS) data / Tobias Frisch, Jonatan Gøttcke, Richard Röttger, Qihua Tan, and Jan Baumbach -- Implementing a transcription factor interaction prediction system using the GenoMetric query language / Stefano Perna, Arif Canakoglu, Pietro Pinoli, Stefano Ceri, and Limsoon Wong -- Multiple testing tool to detect combinatorial effects in biology / Aika Terada and Koji Tsuda -- SiBIC : a tool for generating a network of biclusters captured by maximal frequent itemset mining / Kei-ichiro Takahashi, David A. duVerle, Sohiya Yotsukura, Ichigaku Takigawa, and Hiroshi Mamitsuka -- Computing and visualizing gene function similarity and coherence with NaviGO / Ziyun Ding, Qing Wei, and Daisuke Kihara -- Analyzing glycan-binding profiles using weighted multiple alignment of trees / Kiyoko F. Aoki-Kinoshita -- Analysis of fluxomic experiments with principal metabolic FluxMode analysis / Sahely Bhadra and Juho Rousu -- Analyzing tandem mass spectra using the DRIP toolkit : training, searching, and post-processing / John T. Halloran -- Sparse modeling to analyze drug-target interaction networks / Yoshihiro Yamanishi -- DrugE-rank : predicting drug-target interactions by learning to rank / Jieyao Deng, Qingjun Yuan, Hiroshi Mamitsuka, and Shanfeng Zhu -- MeSHLabeler and DeepMeSH : recent progress in large-scale MeSH indexing / Shengwen Peng, Hiroshi Mamitsuka, and Shanfeng Zhu -- Disease gene classification with metagraph representations / Sezin Kircali Ata, Yuan Fang, Min Wu, Xiao-Li Li, and Xiaokui Xiao -- Inferring antimicrobial resistance from pathogen genomes in KEGG / Minoru Kanehisa.

ISBN

9781493985609 (canceled/invalid)

Owning Institutions

Princeton University Library